1. Overview | 2. Installation | 3. Quick start | 4. Understanding the subsets | 5. Summary tables | 6. Obtaining detailed output | 7. Customizing the Venn diagram | 7.1 Ellipse lines and fills | 7.2 Set labels | 7.3 Subset labels | 7.4 Counts and percentages | 8. Working with ellipse paths | 9. Set operations on Venn regions | 9.1 Intersection | 9.2 Union | 9.3 Set difference | 9.4 Chaining operations | 10. Case study: RNA-seq analysis | 10.1 Prerequisites | 10.2 Background information | 10.3 Loss-of-function (Set C) | 10.4 High-dosage recovery (Subset BCD) | 11. Practical recommendations | Choose venny() when: | Choose venn_summary() when: | Use ellipse-path operations when: | Summary
Package: venny 0.0.5
venny: Venn Diagram
Generate Venn plots, summary tables, and ellipse paths for polygon clipping. Provides direct access to subsets of interest and offers flexible customization of Venn diagrams. Summary tables are also available when Venn diagram visualization is not suitable.
Authors:
venny_0.0.5.tar.gz
venny_0.0.5.zip(r-4.7-any)venny_0.0.5.zip(r-4.6-any)venny_0.0.5.zip(r-4.5-any)
venny_0.0.5.tgz(r-4.6-any)venny_0.0.5.tgz(r-4.5-any)
venny_0.0.5.tar.gz(r-4.7-any)venny_0.0.5.tar.gz(r-4.6-any)
venny_0.0.5.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
venny/json (API)
| # Install 'venny' in R: |
| install.packages('venny', repos = c('https://p10911004-npust.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/p10911004-npust/venny/issues
Pkgdown/docs site:https://p10911004-npust.github.io
Datasets:
- LGL23 - RNA-seq data
data-visualizationggplotset-operationsvenn
Last updated from:069f264602. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 164 | ||
| source / vignettes | OK | 351 | ||
| linux-release | OK | 184 | ||
| macos-release | OK | 127 | ||
| macos-oldrel | OK | 111 | ||
| windows-devel | OK | 134 | ||
| windows-release | OK | 145 | ||
| windows-oldrel | OK | 124 | ||
| wasm-release | OK | 160 |
Exports:bits_encodingellipse_fillellipse_lineellipse_positionfixed_lengthgenerate_ellipse_pathhighlighthow_many_subsetsintersectset_label_defaultset_label_fontset_label_positionsetdiffsubset_count_fontsubset_count_positionsubset_label_defaultsubset_label_fontsubset_label_positionsubset_percentage_fontsubset_percentage_positionunionvenn_summaryvenny
Dependencies:clicpp11farverggplot2gluegtableisobandlabelinglifecyclepolyclipR6RColorBrewerrlangS7scalesvctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Create a bits matrix | bits_encoding |
| Control the ellipse textures | ellipse_fill ellipse_line |
| Ellipse positions | ellipse_position |
| Fixed Length Vector | fixed_length |
| Generate Ellipse Path | generate_ellipse_path |
| Draw polygons to highlight subsets | highlight |
| How many subsets | how_many_subsets |
| RNA-seq data | LGL23 |
| Set labels | set_label_default subset_label_default |
| Set label font | set_label_font subset_count_font subset_label_font subset_percentage_font |
| Set label position | set_label_position subset_count_position subset_label_position subset_percentage_position |
| Set operations | intersect intersect.venny_setops setdiff setdiff.venny_setops setops union union.venny_setops |
| Create a 'venny' summary data.frame | venn_summary |
| Venn diagram | venny |